Basic Information
Locus ID:
gene-QOZ80_8BG0657150
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 48900498 | 48903528 | + | gene-QOZ80_8BG0657150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 35,884.00 Da | 47.84 | 95.03 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 58 | 109 | 3.22083E-21 | - |
| Pfam | PF12906 | RING-variant domain | 58 | 108 | 9.1E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 113 | 9.3E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 122 | 2.0E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 57 | 109 | 1.4E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 50 | 115 | 21.983213 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_008676259.1 | uncharacterized protein LOC100282293 isoform X1 [Zea mays] | 0 |
| TrEMBL | B4FKE9 | C3HC4-type zinc finger protein OS=Zea mays OX=4577 GN=100282293 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology