HalophFGD

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Basic Information
Locus ID: gene-QOZ80_8BG0656020
Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504
Genome Assembly: GCA_032690845.1
Description: gag-polypeptide of LTR copia-type
Maps and Mapping Data
Chromosome Start End Strand ID
chr8B 45746833 45750722 + gene-QOZ80_8BG0656020
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.89 122,506.12 Da 38.78 84.89 -0.34
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd09272 RNase_HI_RT_Ty1 942 1080 2.52441E-65 -
Pfam PF13976 GAG-pre-integrase domain 257 305 4.6E-8 IPR025724
Pfam PF00098 Zinc knuckle 126 141 7.1E-5 IPR001878
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 613 856 9.8E-95 IPR013103
SUPERFAMILY SSF53098 Ribonuclease H-like 305 391 3.54E-23 IPR012337
SUPERFAMILY SSF57756 Retrovirus zinc finger-like domains 117 149 4.34E-7 IPR036875
SUPERFAMILY SSF56672 DNA/RNA polymerases 613 1048 6.23E-28 IPR043502
Gene3D G3DSA:3.30.420.10 - 299 399 1.2E-20 IPR036397
Gene3D G3DSA:4.10.60.10 - 121 201 2.4E-6 -
SMART SM00343 c2hcfinal6 126 142 0.0018 IPR001878
ProSiteProfiles PS50158 Zinc finger CCHC-type profile. 126 142 10.01534 IPR001878
ProSiteProfiles PS50994 Integrase catalytic domain profile. 208 390 16.271259 IPR001584
MobiDBLite mobidb-lite consensus disorder prediction 83 120 - -
MobiDBLite mobidb-lite consensus disorder prediction 488 517 - -
MobiDBLite mobidb-lite consensus disorder prediction 106 120 - -
MobiDBLite mobidb-lite consensus disorder prediction 496 517 - -
Gene Ontology
Biological Process:
GO:0015074 (DNA integration)
Molecular Function:
GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G23160.2 - 0
RefSeq XP_040254454.2 LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 [Aegilops tauschii subsp. strangulata] 0
Swiss-Prot P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 0
TrEMBL Q25AF6 H0512B01.8 protein OS=Oryza sativa OX=4530 GN=H0512B01.8 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Asteraceae Flaveria trinervia 4 Ftri18G33038, Ftri6G26243, Ftri6G34149, FtriNA26240
Brassicaceae Brassica nigra 3 BniB02g044040.2N, BniB05g046390.2N, BniB07g028240.2N
Plantaginaceae Plantago ovata 2 Pov_00029076, Pov_00039561
Poaceae Echinochloa crus-galli 7 AH01.168, AH01.4944, AH04.1262, AH05.424, AH07.1449 ...
CH03.241, CH08.965
Poaceae Eleusine coracana subsp. coracana 85 gene-QOZ80_1AG0019300, gene-QOZ80_1AG0021820 ...
gene-QOZ80_1AG0024230, gene-QOZ80_1AG0037390, gene-QOZ80_1BG0049180, gene-QOZ80_1BG0085100, gene-QOZ80_2AG0105550, gene-QOZ80_2AG0133820, gene-QOZ80_2AG0148240, gene-QOZ80_2BG0158440, gene-QOZ80_2BG0169390, gene-QOZ80_2BG0181270, gene-QOZ80_2BG0183300, gene-QOZ80_2BG0199500, gene-QOZ80_2BG0201130, gene-QOZ80_2BG0205470, gene-QOZ80_2BG0206350, gene-QOZ80_3AG0208060, gene-QOZ80_3AG0220240, gene-QOZ80_3AG0224320, gene-QOZ80_3AG0225270, gene-QOZ80_3AG0227500, gene-QOZ80_3AG0235790, gene-QOZ80_3AG0243220, gene-QOZ80_3AG0244010, gene-QOZ80_3AG0245460, gene-QOZ80_3BG0256980, gene-QOZ80_3BG0283640, gene-QOZ80_4AG0323660, gene-QOZ80_4BG0329460, gene-QOZ80_4BG0330660, gene-QOZ80_4BG0330910, gene-QOZ80_4BG0332300, gene-QOZ80_4BG0350850, gene-QOZ80_5AG0362120, gene-QOZ80_5AG0362550, gene-QOZ80_5AG0365140, gene-QOZ80_5AG0388210, gene-QOZ80_5AG0395900, gene-QOZ80_5AG0398000, gene-QOZ80_5AG0407020, gene-QOZ80_5BG0416820, gene-QOZ80_5BG0421890, gene-QOZ80_5BG0426390, gene-QOZ80_5BG0429910, gene-QOZ80_5BG0452680, gene-QOZ80_5BG0453400, gene-QOZ80_5BG0455110, gene-QOZ80_5BG0456990, gene-QOZ80_6AG0507950, gene-QOZ80_6AG0522670, gene-QOZ80_6AG0526690, gene-QOZ80_6AG0534700, gene-QOZ80_6BG0459300, gene-QOZ80_6BG0460940, gene-QOZ80_6BG0494750, gene-QOZ80_6BG0496090, gene-QOZ80_6BG0502860, gene-QOZ80_7AG0560080, gene-QOZ80_7AG0575580, gene-QOZ80_7BG0584000, gene-QOZ80_7BG0585870, gene-QOZ80_7BG0595270, gene-QOZ80_7BG0595920, gene-QOZ80_7BG0598960, gene-QOZ80_8AG0618400, gene-QOZ80_8AG0619760, gene-QOZ80_8AG0620590, gene-QOZ80_8AG0639870, gene-QOZ80_8BG0656020, gene-QOZ80_8BG0665070, gene-QOZ80_9AG0670230, gene-QOZ80_9AG0673270, gene-QOZ80_9AG0674220, gene-QOZ80_9AG0675740, gene-QOZ80_9AG0681710, gene-QOZ80_9BG0694080, gene-QOZ80_9BG0701040, gene-QOZ80_9BG0709940, gene-QOZ80_9BG0711120, gene-QOZ80_9BG0711600, gene-QOZ80_UnG0724950, gene-QOZ80_UnG0726010, gene-QOZ80_UnG0726990, gene-QOZ80_UnG0730010
Poaceae Lolium multiflorum 12 gene-QYE76_002090, gene-QYE76_004107, gene-QYE76_010998 ...
gene-QYE76_013193, gene-QYE76_029165, gene-QYE76_037880, gene-QYE76_051587, gene-QYE76_052644, gene-QYE76_053432, gene-QYE76_056804, gene-QYE76_058369, gene-QYE76_066013
Poaceae Oryza coarctata 2 Oco06G010700, Oco21G004780
Poaceae Sporobolus alterniflorus 17 Chr01G029280, Chr04G018110, Chr04G029980, Chr05G019600 ...
Chr05G026820, Chr08G012260, Chr0G001440, Chr11G014150, Chr12G014230, Chr15G010750, Chr19G011560, Chr20G012820, Chr22G007660, Chr24G012860, Chr26G013550, Chr27G000450, Chr30G002280
Poaceae Zoysia japonica 66 nbis-gene-12256, nbis-gene-12257, nbis-gene-1525 ...
nbis-gene-1526, nbis-gene-16914, nbis-gene-17541, nbis-gene-19679, nbis-gene-24621, nbis-gene-27637, nbis-gene-27673, nbis-gene-27674, nbis-gene-33940, nbis-gene-33941, nbis-gene-34280, nbis-gene-34281, nbis-gene-34507, nbis-gene-39486, nbis-gene-39685, nbis-gene-40438, nbis-gene-40687, nbis-gene-41962, nbis-gene-43787, nbis-gene-44380, nbis-gene-44391, nbis-gene-44606, nbis-gene-46358, nbis-gene-46929, nbis-gene-48847, nbis-gene-49079, nbis-gene-50718, nbis-gene-50802, nbis-gene-50849, nbis-gene-51475, nbis-gene-51633, nbis-gene-52384, nbis-gene-52833, nbis-gene-52891, nbis-gene-52892, nbis-gene-53916, nbis-gene-53917, nbis-gene-54339, nbis-gene-54582, nbis-gene-54696, nbis-gene-55542, nbis-gene-55996, nbis-gene-56037, nbis-gene-56213, nbis-gene-56371, nbis-gene-56891, nbis-gene-56941, nbis-gene-56960, nbis-gene-57547, nbis-gene-57579, nbis-gene-57604, nbis-gene-57883, nbis-gene-58199, nbis-gene-58243, nbis-gene-58244, nbis-gene-58280, nbis-gene-58281, nbis-gene-58288, nbis-gene-58660, nbis-gene-59066, nbis-gene-59072, nbis-gene-6411, nbis-gene-643
Poaceae Zoysia macrostachya 1 Zma_g3359
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