Basic Information
Locus ID:
gene-QOZ80_8BG0654690
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 35762422 | 35780927 | + | gene-QOZ80_8BG0654690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 47,864.61 Da | 20.83 | 103.10 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 295 | 391 | 6.23902E-28 | - |
| CDD | cd00030 | C2 | 124 | 226 | 2.68506E-25 | - |
| Pfam | PF00168 | C2 domain | 294 | 388 | 6.2E-26 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 1 | 109 | 9.2E-8 | IPR039010 |
| Pfam | PF00168 | C2 domain | 122 | 226 | 1.0E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 289 | 412 | 1.42E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 120 | 252 | 4.98E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 114 | 250 | 7.0E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 272 | 411 | 1.6E-35 | IPR035892 |
| SMART | SM00239 | C2_3c | 294 | 392 | 3.9E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 123 | 223 | 4.7E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 103 | 224 | 20.300158 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 1 | 109 | 16.345898 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 275 | 393 | 21.706295 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 310 | 322 | 7.2E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 336 | 349 | 7.2E-8 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 358 | 366 | 7.2E-8 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.2 | - | 0 |
| RefSeq | XP_002461108.1 | synaptotagmin-5 [Sorghum bicolor] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1W0W7H3 | Synaptotagmin-5 OS=Sorghum bicolor OX=4558 GN=SORBI_3002G393700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology