Basic Information
Locus ID:
gene-QOZ80_8BG0652480
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 17563953 | 17565059 | + | gene-QOZ80_8BG0652480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 41,248.30 Da | 52.05 | 71.93 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 24 | 59 | 6.6E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 66 | 1.14E-9 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 146 | 214 | 1.05E-8 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 20 | 80 | 2.9E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 91 | 217 | 1.1E-9 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 21 | 57 | 8.543671 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 358 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60400.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_039815033.1 | uncharacterized protein LOC120677912 [Panicum virgatum] | 0 |
| Q1PFI4 | F-box protein At1g60400 OS=Arabidopsis thaliana OX=3702 GN=At1g60400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T0QW56 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6NG094900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology