Basic Information
Locus ID:
gene-QOZ80_8BG0650770
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 12816757 | 12817872 | - | gene-QOZ80_8BG0650770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 41,739.21 Da | 50.87 | 94.04 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 27 | 158 | 1.05663E-21 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 189 | 305 | 6.9E-22 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 173 | 305 | 3.77E-23 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 24 | 164 | 2.62E-25 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 25 | 162 | 5.3E-22 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 305 | 371 | 1.8E-18 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 171 | 304 | 5.4E-28 | IPR011333 |
| SMART | SM00225 | BTB_4 | 197 | 306 | 2.4E-18 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 26 | 157 | 15.302611 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 197 | 264 | 15.514545 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_034599980.1 | BTB/POZ and MATH domain-containing protein 2-like [Setaria viridis] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TYQ5 | BTB domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_6G018500v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_8AG0622620, gene-QOZ80_8AG0622680 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021820, Chr20G009970, Chr20G009980, Chr29G009620 |