Basic Information
Locus ID:
gene-QOZ80_8BG0642310
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 495795 | 500176 | - | gene-QOZ80_8BG0642310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 70,119.00 Da | 55.67 | 72.84 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 152 | 230 | 2.9E-5 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 279 | 632 | 2.6E-32 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 274 | 634 | 5.89E-48 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 143 | 229 | 4.0E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 238 | 1.2E-6 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 358 | 636 | 7.5E-41 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 263 | 357 | 9.4E-9 | - |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 150 | 230 | 11.306807 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 278 | 635 | 29.131027 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 279 | 294 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 11 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 91 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_039847200.1 | ubiquitin carboxyl-terminal hydrolase 2-like [Panicum virgatum] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0A9B8U8 | USP domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology