Basic Information
Locus ID:
gene-QOZ80_8BG0642260
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 444334 | 446563 | - | gene-QOZ80_8BG0642260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 61,905.05 Da | 54.56 | 77.96 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 191 | 556 | 6.4E-18 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 71 | 169 | 2.47E-5 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 190 | 558 | 2.94E-42 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 185 | 559 | 1.6E-39 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 190 | 559 | 22.808041 | IPR028889 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 114 | 134 | - | IPR013087 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 191 | 206 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40930.1 | ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. | 0 |
| RefSeq | XP_034599960.1 | ubiquitin carboxyl-terminal hydrolase 2-like [Setaria viridis] | 0 |
| P39538 | Ubiquitin carboxyl-terminal hydrolase 12 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UBP12 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6U064 | Ubiquitinyl hydrolase 1 OS=Setaria viridis OX=4556 GN=SEVIR_6G008100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology