Basic Information
Locus ID:
gene-QOZ80_8BG0642020
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 274358 | 277107 | - | gene-QOZ80_8BG0642020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 54,771.75 Da | 64.43 | 76.02 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 236 | 279 | 1.18641E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 29 | 166 | 4.27692E-49 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 236 | 279 | 6.7E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 67 | 145 | 3.5E-9 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 292 | 1.9E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 85 | 146 | 4.32E-7 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 23 | 158 | 2.8E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 284 | 1.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 237 | 278 | 1.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 237 | 279 | 12.282736 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_022683214.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X1 [Setaria italica] | 0 |
| Q69U49 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RMR1 PE=2 SV=2 | 0 | |
| TrEMBL | K3YKW7 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101784080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology