Basic Information
Locus ID:
gene-QOZ80_8AG0639200
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
UBP2
Description:
Ubiquitinyl hydrolase 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 46028998 | 46034130 | + | gene-QOZ80_8AG0639200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 66,838.86 Da | 52.41 | 74.84 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 201 | 598 | 1.3E-36 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 90 | 156 | 1.2E-6 | IPR001607 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 181 | 600 | 1.22E-49 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 159 | 1.88E-10 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 358 | 603 | 5.1E-34 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 60 | 159 | 1.8E-9 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 180 | 357 | 9.2E-11 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 163 | 601 | 29.288387 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 88 | 158 | 12.811701 | IPR001607 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 531 | 550 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 424 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_034600573.1 | ubiquitin carboxyl-terminal hydrolase 1-like [Setaria viridis] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9T0R0 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_48094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology