Basic Information
Locus ID:
gene-QOZ80_8AG0637430
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 44561919 | 44566414 | + | gene-QOZ80_8AG0637430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 48,227.23 Da | 47.16 | 69.17 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 278 | 352 | 3.88178E-31 | - |
| CDD | cd12619 | RRM2_PUB1 | 155 | 229 | 2.21772E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 71 | 137 | 9.1E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 156 | 226 | 2.1E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 280 | 346 | 6.4E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 271 | 360 | 2.17E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 67 | 234 | 1.01E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 153 | 1.6E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 254 | 356 | 3.0E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 154 | 241 | 1.5E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 70 | 139 | 8.9E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 155 | 228 | 0.68 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 279 | 348 | 2.2E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 279 | 348 | 3.1 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 155 | 228 | 2.8E-22 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 69 | 143 | 15.374476 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 278 | 352 | 15.971415 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 154 | 232 | 16.755964 | IPR000504 |
| Coils | Coil | Coil | 8 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_004973927.1 | oligouridylate-binding protein 1B [Setaria italica] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835A262 | Oligouridylate-binding protein 1-like OS=Digitaria exilis OX=1010633 GN=HU200_065738 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology