Basic Information
Locus ID:
gene-QOZ80_8AG0636350
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 43842688 | 43845982 | + | gene-QOZ80_8AG0636350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 47,304.12 Da | 40.56 | 91.48 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 58 | 356 | 1.99558E-173 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 378 | 416 | 3.7E-9 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 57 | 356 | 5.23E-40 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 372 | 416 | 2.88E-13 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 56 | 357 | 1.2E-33 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 361 | 417 | 1.2E-12 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 373 | 438 | 15.092894 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 58 | 357 | 26.10375 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_021307821.1 | glycerophosphodiester phosphodiesterase GDPDL3 isoform X2 [Sorghum bicolor] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5J9T427 | glycerophosphodiester phosphodiesterase OS=Eragrostis curvula OX=38414 GN=EJB05_48409 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology