Basic Information
Locus ID:
gene-QOZ80_8AG0634630
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 42566495 | 42569744 | - | gene-QOZ80_8AG0634630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 86,308.45 Da | 44.55 | 79.86 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 720 | 767 | 7.5E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 722 | 768 | 4.71E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 708 | 772 | 1.0E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 723 | 762 | 0.0022 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 723 | 763 | 10.6304 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 311 | - | - |
| Coils | Coil | Coil | 675 | 695 | - | - |
| Coils | Coil | Coil | 534 | 575 | - | - |
| Coils | Coil | Coil | 597 | 617 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025804032.1 | putative E3 ubiquitin-protein ligase RF4 [Panicum hallii] | 0 |
| O62640 | Putative inhibitor of apoptosis OS=Sus scrofa OX=9823 GN=PIAP PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9SFM8 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_57114 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0679s00005.v1.0 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.879, BH03.1007, CH03.1169 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8AG0634630 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002218 |
| Poaceae | Oryza coarctata | 2 | Oco13G005350, Oco14G006640 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G079300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703507 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G006820, Chr28G006320 |
| Poaceae | Zea mays | 1 | Zm00001eb094680_P002 |