Basic Information
Locus ID:
gene-QOZ80_8AG0634560
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 42443129 | 42450057 | - | gene-QOZ80_8AG0634560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.31 | 107,241.04 Da | 53.24 | 68.58 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 447 | 749 | 2.07086E-132 | - |
| Pfam | PF01753 | MYND finger | 113 | 150 | 1.7E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 446 | 748 | 1.4E-45 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 110 | 152 | 1.74E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 443 | 753 | 1.49E-83 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 439 | 762 | 8.4E-92 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 99 | 153 | 4.1E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 446 | 751 | 52.34869 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 113 | 150 | 11.421184 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 447 | 462 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 113 | 150 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 977 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 815 | 852 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 912 | - | - |
| Coils | Coil | Coil | 40 | 60 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_039815555.1 | ubiquitin carboxyl-terminal hydrolase 17-like [Panicum virgatum] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9T2E2 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Eragrostis curvula OX=38414 GN=EJB05_48675 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology