Basic Information
Locus ID:
gene-QOZ80_8AG0625840
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 23671582 | 23681558 | + | gene-QOZ80_8AG0625840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 56,604.61 Da | 22.88 | 103.39 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 203 | 305 | 2.50359E-25 | - |
| CDD | cd00030 | C2 | 374 | 470 | 7.50239E-29 | - |
| Pfam | PF00168 | C2 domain | 372 | 467 | 1.4E-26 | IPR000008 |
| Pfam | PF00168 | C2 domain | 201 | 305 | 1.3E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 9 | 188 | 5.7E-17 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 199 | 331 | 7.12E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 371 | 490 | 7.54E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 351 | 490 | 4.4E-36 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 193 | 329 | 8.8E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 373 | 471 | 9.7E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 202 | 302 | 4.7E-22 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 354 | 472 | 21.97616 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 179 | 303 | 20.364073 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 6 | 188 | 28.214579 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 415 | 428 | 1.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 437 | 445 | 1.5E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 389 | 401 | 1.5E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_002461108.1 | synaptotagmin-5 [Sorghum bicolor] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1B6QFU3 | Synaptotagmin-5 OS=Sorghum bicolor OX=4558 GN=SORBI_3002G393700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology