Basic Information
Locus ID:
gene-QOZ80_8AG0622620
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 11338817 | 11339920 | + | gene-QOZ80_8AG0622620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 41,276.54 Da | 48.27 | 96.68 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 26 | 156 | 2.30418E-21 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 187 | 301 | 5.1E-21 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 23 | 161 | 1.14E-26 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 171 | 300 | 5.1E-25 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 25 | 160 | 8.0E-23 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 304 | 366 | 1.1E-17 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 164 | 303 | 3.7E-28 | IPR011333 |
| SMART | SM00225 | BTB_4 | 195 | 302 | 2.9E-15 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 25 | 155 | 16.86235 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 195 | 260 | 15.080223 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_004974328.1 | BTB/POZ and MATH domain-containing protein 2 [Setaria italica] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | K3YN23 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G020000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_8AG0622620, gene-QOZ80_8AG0622680 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021820, Chr20G009970, Chr20G009980, Chr29G009620 |