Basic Information
Locus ID:
gene-QOZ80_8AG0622250
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 10434147 | 10450463 | - | gene-QOZ80_8AG0622250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 77,624.77 Da | 45.47 | 94.56 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 39 | 294 | 2.5E-50 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 23 | 303 | 2.29E-64 | IPR011009 |
| SUPERFAMILY | SSF49354 | PapD-like | 324 | 433 | 1.26E-5 | IPR008962 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 470 | 670 | 4.82E-19 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 128 | 311 | 3.9E-46 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 325 | 439 | 1.5E-5 | IPR013783 |
| Gene3D | G3DSA:2.130.10.10 | - | 467 | 681 | 5.9E-22 | IPR015943 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 10 | 107 | 3.4E-22 | - |
| SMART | SM00320 | WD40_4 | 621 | 662 | 0.06 | IPR001680 |
| SMART | SM00220 | serkin_6 | 36 | 302 | 1.2E-37 | IPR000719 |
| SMART | SM00320 | WD40_4 | 580 | 618 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 498 | 40.0 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 36 | 302 | 35.113815 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 168 | 180 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 42 | 64 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G04570.3 | - | 0 |
| RefSeq | XP_022683170.1 | protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4-like isoform X3 [Setaria italica] | 0 |
| Q9SYS3 | Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana OX=3702 GN=CRK40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A368RJ20 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G070300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene-QOZ80_8AG0622250.