Basic Information
Locus ID:
gene-QOZ80_8AG0619410
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 5248648 | 5255154 | + | gene-QOZ80_8AG0619410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 97,631.70 Da | 51.21 | 81.08 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 739 | 844 | 2.9932E-49 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 477 | 578 | 2.9E-9 | IPR000330 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 276 | 426 | 1.1E-15 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 733 | 834 | 9.4E-14 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 617 | 653 | 1.6E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 607 | 662 | 3.14E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 509 | 891 | 1.16E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 252 | 427 | 4.56E-12 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 516 | 892 | 3.3E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 234 | 326 | 4.3E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 607 | 668 | 1.8E-10 | IPR013083 |
| SMART | SM00490 | helicmild6 | 751 | 834 | 5.0E-17 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 721 | 887 | 13.700725 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 617 | 656 | 10.77793 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 632 | 641 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 443 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_004957553.1 | helicase-like transcription factor CHR28 isoform X1 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W4K6 | Helicase-like transcription factor CHR28 OS=Eragrostis curvula OX=38414 GN=EJB05_09494 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology