Basic Information
Locus ID:
gene-QOZ80_8AG0618500
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 4072271 | 4073671 | - | gene-QOZ80_8AG0618500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.73 | 50,683.13 Da | 71.25 | 69.06 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 249 | 293 | 6.72719E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 249 | 296 | 2.2E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 298 | 6.65E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 243 | 338 | 2.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 251 | 291 | 1.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 251 | 292 | 14.053096 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 266 | 275 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 441 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 410 | 466 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74990.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004976233.1 | uncharacterized protein LOC101753179 [Setaria italica] | 0 |
| Q99942 | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9J6P1 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH08.409, BH08.418, CH08.493 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0618500, gene-QOZ80_8BG0646000 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0695010.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007280, gene-QYE76_017957 |
| Poaceae | Oryza coarctata | 2 | Oco15G002730, Oco16G002750 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g06510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701109 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G011530, Chr29G011080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G511100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG041150, gene_TRIDC7BG031060 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G296500.1, TraesCS7B02G189000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb130470_P001, Zm00001eb340170_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39018, nbis-gene-41664 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22520, Zma_g22521, Zma_g23657 |