Basic Information
Locus ID:
gene-QOZ80_8AG0614770
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Protein NRT1 PTR FAMILY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 532317 | 535851 | + | gene-QOZ80_8AG0614770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 70,243.77 Da | 52.11 | 74.69 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 189 | 630 | 2.7E-34 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 188 | 632 | 9.81E-64 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 75 | 167 | 6.0E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 171 | 6.5E-6 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 183 | 635 | 2.7E-63 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 188 | 633 | 38.057598 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 189 | 204 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 564 | 582 | - | IPR018200 |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 112 | 132 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 474 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_022683291.1 | ubiquitin carboxyl-terminal hydrolase 2 [Setaria italica] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A368RGX3 | Ubiquitinyl hydrolase 1 OS=Setaria italica OX=4555 GN=SETIT_6G008900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology