Basic Information
Locus ID:
gene-QOZ80_8AG0614550
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8A | 371120 | 373891 | - | gene-QOZ80_8AG0614550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 55,594.62 Da | 63.95 | 73.29 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 243 | 286 | 1.02594E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 21 | 173 | 6.79298E-49 | IPR044744 |
| Pfam | PF02225 | PA domain | 74 | 152 | 1.5E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 243 | 286 | 6.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 299 | 1.96E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 92 | 154 | 2.62E-7 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 35 | 165 | 1.1E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 206 | 291 | 1.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 244 | 285 | 1.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 244 | 286 | 12.282736 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_022683214.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X1 [Setaria italica] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | K3YKW7 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101784080 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology