Basic Information
Locus ID:
gene-QOZ80_7BG0613160
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 58310739 | 58318643 | + | gene-QOZ80_7BG0613160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 100,170.11 Da | 40.34 | 83.53 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 4.48611E-55 | - |
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 1.03548E-92 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 214 | 322 | 9.5E-20 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 336 | 396 | 3.5E-12 | IPR032284 |
| Pfam | PF09382 | RQC domain | 400 | 499 | 1.6E-22 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 545 | 610 | 1.0E-12 | IPR002121 |
| Pfam | PF14493 | Helix-turn-helix domain | 653 | 749 | 3.1E-15 | IPR029491 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 174 | 3.3E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 337 | 1.07E-53 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 394 | 497 | 4.22E-24 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 539 | 622 | 2.11E-16 | IPR010997 |
| Gene3D | G3DSA:1.10.10.10 | - | 398 | 523 | 5.9E-36 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 397 | 9.1E-57 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 539 | 627 | 1.4E-14 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 2.9E-70 | IPR027417 |
| SMART | SM00341 | hrdc7 | 542 | 622 | 7.4E-7 | IPR002121 |
| SMART | SM00956 | RQC_2 | 403 | 507 | 2.5E-20 | IPR018982 |
| SMART | SM00487 | ultradead3 | 10 | 205 | 4.3E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 1.2E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 5 | 455 | 5.4E-148 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 542 | 622 | 17.028149 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 22.021313 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 377 | 18.401279 | IPR001650 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_034581483.1 | probable ATP-dependent DNA helicase RecQ [Setaria viridis] | 0 |
| Q9CL21 | ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain Pm70) OX=272843 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9SQD2 | ATP-dependent DNA helicase OS=Eragrostis curvula OX=38414 GN=EJB05_53381 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology