Basic Information
Locus ID:
gene-QOZ80_7BG0609390
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 55912071 | 55912955 | + | gene-QOZ80_7BG0609390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 26,757.17 Da | 52.96 | 83.36 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 120 | 165 | 6.8E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 116 | 171 | 7.51E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 173 | 1.6E-8 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 123 | 164 | 9.612443 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 45 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025804242.1 | E3 ubiquitin-protein ligase hel2-like isoform X2 [Panicum hallii] | 0 |
| TrEMBL | A0A5J9SYT2 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_50250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1248s00003.v1.0 |
| Poaceae | Echinochloa crus-galli | 8 | AH03.1700, AH03.3767, BH01.2823, BH03.4047, CH03.2036 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0578090, gene-QOZ80_7BG0609390 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0122090.1.CDS1 |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_002817, gene-QYE76_039548, gene-QYE76_039634 ... |
| Poaceae | Oryza coarctata | 7 | Oco02G013000, Oco02G013010, Oco02G013020, Oco06G011720 ... |
| Poaceae | Oryza sativa | 9 | LOC_Os01g38690.1, LOC_Os01g38700.1, LOC_Os01g38710.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G164300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604504 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G011450, Chr11G010870, Chr27G015410, Chr27G015420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G309500 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G156000.1.cds1, TraesCS2B02G181500.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17826 |