Basic Information
Locus ID:
gene-QOZ80_7BG0608410
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 55270541 | 55275571 | + | gene-QOZ80_7BG0608410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 45,949.28 Da | 42.20 | 78.14 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 70 | 140 | 2.61198E-33 | - |
| CDD | cd12354 | RRM3_TIA1_like | 264 | 337 | 5.50891E-30 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 155 | 214 | 4.6E-6 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 265 | 331 | 1.7E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 70 | 136 | 7.7E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 249 | 340 | 2.31E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 67 | 223 | 1.7E-32 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 242 | 340 | 8.5E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 150 | 241 | 1.2E-11 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 149 | 2.1E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 154 | 216 | 4.8E-9 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 264 | 333 | 2.3E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 69 | 138 | 3.1E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 263 | 337 | 15.357421 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 153 | 220 | 9.814416 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 68 | 142 | 15.033368 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 242 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_015644593.1 | oligouridylate-binding protein 1 [Oryza sativa Japonica Group] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VR85 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_11279 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology