Basic Information
Locus ID:
gene-QOZ80_7BG0602940
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 50666153 | 50667199 | - | gene-QOZ80_7BG0602940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 39,727.98 Da | 36.04 | 108.94 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 17 | 57 | 4.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 66 | 3.4E-12 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 139 | 300 | 1.49E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 132 | 347 | 1.4E-5 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 63 | 2.2E-7 | - |
| SMART | SM00256 | fbox_2 | 21 | 61 | 0.0021 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 51 | 10.133335 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05080.1 | F-box/RNI-like/FBD-like domains-containing protein. | 0 |
| RefSeq | XP_004959734.1 | putative F-box/FBD/LRR-repeat protein At4g03220 [Setaria italica] | 0 |
| Q9ZVP2 | Putative FBD-associated F-box protein At1g05080 OS=Arabidopsis thaliana OX=3702 GN=At1g05080 PE=4 SV=2 | 0 | |
| TrEMBL | A0A5J9VUK3 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_12136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH03.3295 |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_7AG0571210, gene-QOZ80_7AG0571240 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040714, gene-QYE76_040716 |
| Poaceae | Oryza coarctata | 2 | Oco13G009510, Oco14G010080 |
| Poaceae | Oryza sativa | 4 | LOC_Os07g36280.1, LOC_Os07g36290.1, LOC_Os07g36300.1 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr19G004900, Chr24G009450, Chr24G009460, Chr24G009470 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-769 |