Basic Information
Locus ID:
gene-QOZ80_7BG0597860
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-6-linked may be involved in DNA repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 41995154 | 41995561 | + | gene-QOZ80_7BG0597860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 15,469.30 Da | 43.81 | 88.81 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 69 | 128 | 6.0E-16 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 63 | 4.0E-10 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 63 | 1.76E-12 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 68 | 129 | 1.26E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 65 | 135 | 1.5E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 64 | 1.1E-14 | - |
| SMART | SM00213 | ubq_7 | 1 | 66 | 1.2E-9 | IPR000626 |
| SMART | SM00213 | ubq_7 | 67 | 131 | 7.7E-16 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 63 | 10.810696 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 67 | 128 | 12.291423 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_044444002.1 | polyubiquitin-like [Triticum aestivum] | 0 |
| P62972 | Polyubiquitin (Fragment) OS=Xenopus laevis OX=8355 PE=1 SV=2 | 0 | |
| TrEMBL | A0A453QD75 | Polyubiquitin OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0597860 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0637460.1.CDS1 |