Basic Information
Locus ID:
gene-QOZ80_7BG0597280
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 38830361 | 38847990 | - | gene-QOZ80_7BG0597280 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 89,009.79 Da | 57.34 | 69.76 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 366 | 394 | 3.0E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 400 | 423 | 8.4E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 359 | 395 | 2.0E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 397 | 429 | 6.5E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 358 | 396 | 2.6E-16 | - |
| SMART | SM00547 | zf_4 | 401 | 425 | 2.4E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 368 | 392 | 2.1E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 366 | 395 | 10.116323 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 399 | 428 | 9.404914 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 403 | 422 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 370 | 389 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 50 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_039792241.1 | uncharacterized protein LOC120658099 [Panicum virgatum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9VV15 | Zinc finger protein VAR3, chloroplastic (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_12844 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology