Basic Information
Locus ID:
gene-QOZ80_7BG0589550
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 6761333 | 6765145 | - | gene-QOZ80_7BG0589550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 73,163.75 Da | 58.23 | 79.28 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16525 | RING-HC_PCGF | 59 | 101 | 2.6366E-18 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 61 | 101 | 3.8E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 57 | 120 | 2.59E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 46 | 141 | 1.4E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 61 | 101 | 4.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 61 | 102 | 10.571388 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 77 | 86 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 615 | 632 | - | - |
| Coils | Coil | Coil | 540 | 560 | - | - |
| Coils | Coil | Coil | 414 | 459 | - | - |
| Coils | Coil | Coil | 340 | 374 | - | - |
| Coils | Coil | Coil | 575 | 602 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.3 | - | 0 |
| RefSeq | XP_022679800.1 | plectin-like isoform X3 [Setaria italica] | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W1X8 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15464 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH03.595 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0589550 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G000250, Chr27G008220 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3405 |