Basic Information
Locus ID:
gene-QOZ80_7BG0587320
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 3748878 | 3754773 | - | gene-QOZ80_7BG0587320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 142,821.34 Da | 41.01 | 108.80 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 418 | 618 | 2.16411E-105 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 722 | 1016 | 2.67603E-81 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1039 | 1259 | 8.63353E-119 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 106 | 392 | 5.81091E-83 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 436 | 570 | 9.1E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 724 | 964 | 1.1E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1058 | 1206 | 5.3E-27 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 105 | 371 | 2.1E-27 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 95 | 392 | 8.63E-34 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1033 | 1273 | 1.71E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 722 | 1023 | 4.32E-46 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 415 | 638 | 1.7E-58 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 94 | 400 | 1.3E-47 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1026 | 1277 | 1.9E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 686 | 1022 | 5.4E-52 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 412 | 646 | 4.3E-74 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1067 | 1252 | 8.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 445 | 626 | 6.6E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1041 | 1275 | 16.693481 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 724 | 1004 | 33.198444 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 418 | 641 | 24.009705 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 104 | 384 | 33.415203 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 543 | 557 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034569184.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TE11 | ABC transporter C family member 3 OS=Setaria viridis OX=4556 GN=SEVIR_8G030300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology