Basic Information
Locus ID:
gene-QOZ80_7BG0584830
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7B | 1574952 | 1579015 | + | gene-QOZ80_7BG0584830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 94,925.41 Da | 41.93 | 79.36 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 482 | 636 | 1.49063E-35 | - |
| CDD | cd10316 | RGL4_M | 368 | 470 | 1.4007E-27 | IPR029413 |
| CDD | cd10320 | RGL4_N | 56 | 328 | 7.36234E-66 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 41 | 232 | 7.2E-70 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 480 | 644 | 1.2E-36 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 395 | 466 | 2.2E-19 | IPR029413 |
| Pfam | PF00646 | F-box domain | 644 | 686 | 5.3E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 644 | 707 | 9.55E-11 | IPR036047 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 408 | 468 | 6.87E-7 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 477 | 644 | 1.02E-28 | IPR008979 |
| Gene3D | G3DSA:2.60.120.260 | - | 477 | 654 | 2.2E-9 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 37 | 326 | 8.3E-14 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 365 | 468 | 4.3E-7 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_034583921.1 | probable rhamnogalacturonate lyase B isoform X1 [Setaria viridis] | 0 |
| TrEMBL | A0A5J9SJ75 | rhamnogalacturonan endolyase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55661 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology