Basic Information
Locus ID:
gene-QOZ80_7AG0581220
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 47191628 | 47194300 | + | gene-QOZ80_7AG0581220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 65,603.27 Da | 42.06 | 78.14 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 472 | 502 | 3.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 427 | 454 | 0.28 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 9 | 505 | 6.59E-28 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 278 | 516 | 2.0E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 268 | 7.3E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 419 | 459 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 503 | 0.0039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 220 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 39 | 85 | 9.1 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 242 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_037420721.1 | autophagy-related protein 18a-like isoform X1 [Triticum dicoccoides] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A811MZ67 | WD_REPEATS_REGION domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS10907 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology