halophFGD

Basic Information

Locus ID: gene-QOZ80_7AG0580400

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: DDT domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr7A	46582331	46591028	-	gene-QOZ80_7AG0580400

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.35	183,823.84 Da	55.56	75.23	-0.58

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd15532	PHD2_CHD_II	423	464	7.68424E-17	-
Pfam	PF00628	PHD-finger	423	465	1.6E-8	IPR019787
Pfam	PF02791	DDT domain	233	285	1.3E-12	IPR018501
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	1301	1361	9.3E-10	IPR011011
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	400	466	4.65E-16	IPR011011
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	1301	1361	4.1E-11	IPR013083
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	410	484	7.2E-16	IPR013083
SMART	SM00571	testlast3	230	290	3.0E-8	IPR018501
SMART	SM00249	PHD_3	422	465	2.5E-12	IPR001965
SMART	SM00249	PHD_3	1307	1355	0.72	IPR001965
ProSiteProfiles	PS50016	Zinc finger PHD-type profile.	420	467	10.1931	IPR019787
ProSiteProfiles	PS50827	DDT domain profile.	230	290	14.958846	IPR018501
ProSitePatterns	PS01359	Zinc finger PHD-type signature.	423	464	-	IPR019786
MobiDBLite	mobidb-lite	consensus disorder prediction	1631	1645	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	57	96	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1153	1230	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1563	1578	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	121	152	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1563	1585	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	177	225	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1622	1646	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1160	1177	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1185	1205	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	72	87	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	853	872	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1207	1221	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	383	413	-	-
Coils	Coil	Coil	939	959	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT5G12400.1	DNA binding;zinc ion binding;DNA binding.
RefSeq	XP_025799580.1	DDT domain-containing protein PTM [Panicum hallii]
Swiss-Prot	F4JYC8	DDT domain-containing protein PTM OS=Arabidopsis thaliana OX=3702 GN=PTM PE=1 SV=1
TrEMBL	A0A5J9VQN7	PHD-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_10712 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16345, jg8187, jg8191, jg8534
Aizoaceae	Mesembryanthemum crystallinum	2	gene_11602, gene_21235
Amaranthaceae	Atriplex hortensis	2	Ah005047, Ah011493
Amaranthaceae	Beta vulgaris	2	BVRB_4g073390, BVRB_9g210880
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg11906, Sbi_jg17859, Sbi_jg46853, Sbi_jg62483
Amaranthaceae	Salicornia europaea	2	Seu_jg1060, Seu_jg21148
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00007175, GOSA_00009474
Amaranthaceae	Suaeda glauca	4	Sgl59177, Sgl80325, Sgl82788, Sgl82794
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000019528, gene:ENSEOMG00000027405 ... gene:ENSEOMG00000037801, gene:ENSEOMG00000037951, gene:ENSEOMG00000038251, gene:ENSEOMG00000044184, gene:ENSEOMG00000052957
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4BG0002060, CQ.Regalona.r1.9AG0010610 ... CQ.Regalona.r1.9AG0010620, CQ.Regalona.r1.9BG0011820
Anacardiaceae	Pistacia vera	2	pistato.v30051350, pistato.v30057270
Apiaceae	Apium graveolens	5	Ag11G04354, Ag2G01027, Ag5G01215, Ag5G02730, Ag6G02295
Arecaceae	Cocos nucifera	2	scaffold005364G000020, scaffold029272G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103696328, gene-LOC103705599, gene-LOC103723835
Asteraceae	Flaveria trinervia	3	Ftri11G03128, Ftri12G12319, Ftri13G15123
Brassicaceae	Arabidopsis thaliana	3	AT5G12400.1, AT5G22760.1, AT5G35210.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10012427m.g.v1.0, Thhalv10012428m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp5g16400.v2.2, Sp6g22660.v2.2, Sp6g31240.v2.2
Brassicaceae	Brassica nigra	5	BniB02g049720.2N, BniB05g025410.2N, BniB05g041460.2N ... BniB08g005920.2N, BniB08g011370.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq05G1663, Ceq05G1715
Casuarinaceae	Casuarina glauca	2	Cgl05G1656, Cgl05G1717
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno03g13560
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g16540, gene.Thate05g01030
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG09.171, evm.TU.LG09.774
Plantaginaceae	Plantago ovata	4	Pov_00006627, Pov_00012500, Pov_00024373, Pov_00026488
Plumbaginaceae	Limonium bicolor	2	Lb3G15682, Lb3G19930
Poaceae	Echinochloa crus-galli	14	AH01.1528, AH01.1529, AH03.3973, AH04.196, AH04.274 ... AH05.185, BH01.1730, BH03.4290, BH04.262, BH05.213, CH01.1805, CH04.283, CH05.270, CH07.220
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_5AG0381300, gene-QOZ80_7AG0580400 ... gene-QOZ80_7BG0611570
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0116410.1, HORVU.MOREX.r3.4HG0355590.1 ... HORVU.MOREX.r3.5HG0459450.1
Poaceae	Lolium multiflorum	3	gene-QYE76_003146, gene-QYE76_039040, gene-QYE76_065275
Poaceae	Oryza coarctata	4	Oco13G014960, Oco14G015810, Oco21G001060, Oco22G001890
Poaceae	Oryza sativa	2	LOC_Os07g46690.1, LOC_Os11g05130.1
Poaceae	Paspalum vaginatum	5	gene-BS78_02G093300, gene-BS78_02G379700 ... gene-BS78_05G047200, gene-BS78_08G022300, gene-BS78_08G022400
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0103659, Pt_Chr0103676, Pt_Chr0305094, Pt_Chr0305146 ... Pt_Chr0703124, Pt_Chr0703163
Poaceae	Sporobolus alterniflorus	11	Chr04G022060, Chr04G022070, Chr04G022080, Chr06G023790 ... Chr07G021400, Chr0G020970, Chr0G021340, Chr16G009270, Chr17G008330, Chr24G013160, Chr31G000920
Poaceae	Thinopyrum elongatum	4	Tel2E01G264700, Tel4E01G208000, Tel5E01G236500 ... Tel6E01G129700
Poaceae	Triticum dicoccoides	7	gene_TRIDC2AG015620, gene_TRIDC2BG018780 ... gene_TRIDC4AG029580, gene_TRIDC4BG020830, gene_TRIDC5AG022870, gene_TRIDC5BG023130, gene_TRIDC7BG048480
Poaceae	Triticum aestivum	9	TraesCS2A02G126900.1, TraesCS2B02G148800.1 ... TraesCS2D02G129400.1, TraesCS4A02G184500.1, TraesCS4B02G134200.1, TraesCS4D02G129100.1, TraesCS5A02G130800.2, TraesCS5B02G130700.3, TraesCS5D02G138300.2
Poaceae	Zea mays	4	Zm00001eb092810_P002, Zm00001eb214600_P001 ... Zm00001eb329910_P001, Zm00001eb406520_P001
Poaceae	Zoysia japonica	3	nbis-gene-167, nbis-gene-25663, nbis-gene-33183
Poaceae	Zoysia macrostachya	3	Zma_g24727, Zma_g5726, Zma_g7016
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1060, evm.TU.LG11.463, evm.TU.LG18.1709 ... evm.TU.LG20.178
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g33260, gene.Posoc05g23110
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_13_RagTag.1011 ... evm.TU.Scaffold_13_RagTag.449
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-30004, nbisL1-mrna-30674
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-3519, nbisL1-mrna-4825
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-16375, nbisL1-mrna-22078
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000015l.256, evm.TU.utg000015l.605
Rhizophoraceae	Kandelia obovata	2	Maker00015617, Maker00015887
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-4141, nbisL1-mrna-4508
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-20784, nbisL1-mrna-22182
Salicaceae	Populus euphratica	5	populus_peu01969, populus_peu08552, populus_peu35835 ... populus_peu35836, populus_peu36785
Solanaceae	Lycium barbarum	3	gene-LOC132600516, gene-LOC132604445, gene-LOC132643627
Solanaceae	Solanum chilense	2	SOLCI001772100, SOLCI002623400
Solanaceae	Solanum pennellii	3	gene-LOC107004581, gene-LOC107004681, gene-LOC107023253
Tamaricaceae	Reaumuria soongarica	2	gene_7401, gene_8603
Tamaricaceae	Tamarix chinensis	2	TC03G1863, TC07G1486
Zosteraceae	Zostera marina	1	Zosma04g20720.v3.1