Basic Information
Locus ID:
gene-QOZ80_7AG0577050
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 44215353 | 44220617 | + | gene-QOZ80_7AG0577050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 46,911.37 Da | 42.50 | 76.33 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 273 | 346 | 5.61887E-29 | - |
| CDD | cd12619 | RRM2_PUB1 | 153 | 227 | 1.7012E-48 | - |
| CDD | cd12352 | RRM1_TIA1_like | 69 | 139 | 2.95126E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 154 | 224 | 2.8E-19 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 69 | 135 | 2.4E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 274 | 340 | 3.3E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 258 | 350 | 2.71E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 146 | 241 | 1.2E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 57 | 145 | 2.96E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 56 | 146 | 1.5E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 251 | 350 | 6.9E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 147 | 244 | 7.8E-27 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 273 | 342 | 1.3E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 68 | 137 | 4.2E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 153 | 226 | 6.7E-4 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 273 | 342 | 2.2 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 153 | 226 | 3.1E-23 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 67 | 141 | 14.879869 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 272 | 346 | 14.948091 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 152 | 230 | 17.233515 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 266 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_015644593.1 | oligouridylate-binding protein 1 [Oryza sativa Japonica Group] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VR85 | Oligouridylate binding protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_11279 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology