Basic Information
Locus ID:
gene-QOZ80_7AG0571260
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 37805154 | 37807658 | - | gene-QOZ80_7AG0571260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 54,860.49 Da | 47.41 | 102.88 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 416 | 449 | 5.9E-5 | IPR006566 |
| Pfam | PF00646 | F-box domain | 17 | 57 | 6.3E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 138 | 295 | 2.98E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 66 | 9.29E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 59 | 6.2E-7 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 15 | 51 | 9.576953 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52460.1 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_002462983.2 | putative F-box/FBD/LRR-repeat protein At4g03220 [Sorghum bicolor] | 0 |
| Q9FHB5 | Putative F-box/FBD/LRR-repeat protein At5g52460 OS=Arabidopsis thaliana OX=3702 GN=EDA41 PE=4 SV=2 | 0 | |
| TrEMBL | K3ZZX1 | F-box domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_2G344900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH03.3295 |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_7AG0571210, gene-QOZ80_7AG0571240 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040714, gene-QYE76_040716 |
| Poaceae | Oryza coarctata | 2 | Oco13G009510, Oco14G010080 |
| Poaceae | Oryza sativa | 4 | LOC_Os07g36280.1, LOC_Os07g36290.1, LOC_Os07g36300.1 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr19G004900, Chr24G009450, Chr24G009460, Chr24G009470 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-769 |