Basic Information
Locus ID:
gene-QOZ80_7AG0571210
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
F-box FBD LRR-repeat protein At4g03220
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 37707392 | 37708548 | - | gene-QOZ80_7AG0571210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 40,650.84 Da | 42.27 | 105.16 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 19 | 51 | 3.4E-4 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 186 | 332 | 5.89E-8 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 60 | 1.57E-10 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 150 | 345 | 5.2E-6 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 11 | 58 | 1.2E-5 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 17 | 50 | 8.967582 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04230.1 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_039797853.1 | F-box/FBD/LRR-repeat protein At2g04230-like [Panicum virgatum] | 0 |
| Q6NKX3 | F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana OX=3702 GN=At2g04230 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9VUK3 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_12136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH03.3295 |
| Poaceae | Eleusine coracana subsp. coracana | 8 | gene-QOZ80_7AG0571210, gene-QOZ80_7AG0571240 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040714, gene-QYE76_040716 |
| Poaceae | Oryza coarctata | 2 | Oco13G009510, Oco14G010080 |
| Poaceae | Oryza sativa | 4 | LOC_Os07g36280.1, LOC_Os07g36290.1, LOC_Os07g36300.1 ... |
| Poaceae | Sporobolus alterniflorus | 6 | Chr19G004900, Chr24G009450, Chr24G009460, Chr24G009470 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-769 |