Basic Information
Locus ID:
gene-QOZ80_7AG0559940
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 9837816 | 9842190 | - | gene-QOZ80_7AG0559940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 102,702.86 Da | 46.76 | 67.83 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 104 | 345 | 1.5E-72 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 113 | 327 | 3.48E-14 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 474 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 894 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 894 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_035820299.1 | uncharacterized protein LOC103644180 isoform X4 [Zea mays] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | Q8H6I4 | Putative gag-pol polyprotein OS=Zea mays OX=4577 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH03.1681, BH02.1694, BH03.321, BH04.871, BH07.2625 ... |
| Poaceae | Eleusine coracana subsp. coracana | 7 | gene-QOZ80_3AG0221350, gene-QOZ80_3BG0267940 ... |
| Poaceae | Oryza coarctata | 4 | Oco03G007240, Oco10G013850, Oco11G010490, Oco19G003500 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_06G044000, gene-BS78_08G060500, gene-BS78_K024200 ... |
| Poaceae | Sporobolus alterniflorus | 9 | Chr01G030640, Chr01G034250, Chr03G009660, Chr05G004500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb384270_P001 |
| Poaceae | Zoysia japonica | 11 | nbis-gene-1295, nbis-gene-27399, nbis-gene-33913 ... |