Basic Information
Locus ID:
gene-QOZ80_7AG0556360
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 4559976 | 4566304 | - | gene-QOZ80_7AG0556360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 143,189.98 Da | 41.20 | 109.29 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 421 | 621 | 5.68558E-106 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 725 | 1019 | 3.08239E-84 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1042 | 1262 | 6.71168E-116 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 108 | 395 | 2.40149E-94 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 439 | 573 | 1.1E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 729 | 967 | 1.8E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1061 | 1209 | 1.5E-26 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 107 | 374 | 2.8E-27 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 417 | 640 | 8.99E-58 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 725 | 1026 | 2.75E-48 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1036 | 1275 | 9.85E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 96 | 395 | 1.7E-35 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 397 | 658 | 1.3E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 96 | 396 | 1.3E-45 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1028 | 1280 | 2.2E-78 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 690 | 1025 | 3.7E-55 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1070 | 1254 | 1.7E-8 | IPR003593 |
| SMART | SM00382 | AAA_5 | 448 | 629 | 2.7E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 421 | 644 | 24.183105 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 727 | 1007 | 35.831882 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 107 | 387 | 33.631962 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1044 | 1278 | 16.580103 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 546 | 560 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_034569184.1 | ABC transporter C family member 3-like [Setaria viridis] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TE11 | ABC transporter C family member 3 OS=Setaria viridis OX=4556 GN=SEVIR_8G030300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology