Basic Information
Locus ID:
gene-QOZ80_7AG0552170
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7A | 281141 | 282747 | + | gene-QOZ80_7AG0552170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 17,449.39 Da | 34.88 | 76.12 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 86 | 156 | 7.90392E-31 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 85 | 154 | 5.7E-28 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 86 | 156 | 6.28E-24 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 15 | 93 | 4.01E-27 | IPR008991 |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 85 | 2.7E-44 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 86 | 159 | 3.8E-32 | - |
| SMART | SM01376 | eIF_5a_2 | 85 | 154 | 1.9E-31 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 17 | 153 | 2.6E-40 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 158 | 1.6E-66 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 50 | 57 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_021308281.1 | eukaryotic translation initiation factor 5A-like [Sorghum bicolor] | 0 |
| P80639 | Eukaryotic translation initiation factor 5A OS=Zea mays OX=4577 GN=TIF5A PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9VX86 | Eukaryotic translation initiation factor 5A OS=Eragrostis curvula OX=38414 GN=EJB05_13688 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology