Basic Information
Locus ID:
gene-QOZ80_6BG0501620
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
cellular macromolecule catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 71796948 | 71797394 | - | gene-QOZ80_6BG0501620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 16,660.92 Da | 52.88 | 110.54 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 3 | 70 | 1.3E-17 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 82 | 136 | 4.8E-14 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 79 | 134 | 2.07E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 68 | 1.13E-17 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 79 | 129 | 1.0E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 78 | 9.8E-23 | - |
| SMART | SM00213 | ubq_7 | 1 | 73 | 7.9E-13 | IPR000626 |
| SMART | SM00213 | ubq_7 | 80 | 143 | 3.9E-6 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 80 | 132 | 15.056899 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 60 | 19.063572 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 27 | 52 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 1.7E-11 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 1.7E-11 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05050.4 | ubiquitin 11. polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. | 0 |
| RefSeq | XP_039826780.1 | polyubiquitin-like isoform X2 [Panicum virgatum] | 0 |
| P0CG83 | Polyubiquitin (Fragment) OS=Hordeum vulgare OX=4513 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J2KEW6 | polyubiquitin-like OS=Bombyx mandarina OX=7092 GN=LOC114250454 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0547940, gene-QOZ80_6BG0501620 |