Basic Information
Locus ID:
gene-QOZ80_6BG0495090
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 67142862 | 67143464 | + | gene-QOZ80_6BG0495090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 20,681.86 Da | 52.17 | 106.90 | 0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 133 | 176 | 4.26799E-16 | - |
| Pfam | PF13639 | Ring finger domain | 133 | 176 | 2.1E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 182 | 6.36E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 182 | 7.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 133 | 175 | 5.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 133 | 176 | 12.84335 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025812624.1 | RING-H2 finger protein ATL8-like [Panicum hallii] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A3L6RZC4 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G15100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology