Basic Information
Locus ID:
gene-QOZ80_6BG0495060
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 67122484 | 67123617 | + | gene-QOZ80_6BG0495060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 39,306.37 Da | 78.73 | 85.17 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 132 | 175 | 7.91079E-20 | - |
| Pfam | PF13639 | Ring finger domain | 132 | 175 | 3.6E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 126 | 181 | 1.67E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 181 | 9.9E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 133 | 174 | 6.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 133 | 175 | 12.430266 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 377 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004965536.1 | RING-H2 finger protein ATL40 [Setaria italica] | 0 |
| Q84W40 | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TBD5 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42122 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1881, CH06.1924 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0495060 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709270.1.CDS1 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_019878, gene-QYE76_019879, gene-QYE76_033977 ... |
| Poaceae | Oryza coarctata | 2 | Oco11G010330, Oco12G010450 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g34390.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G154400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400172, Pt_Chr0400181 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G028430, Chr05G006120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G570400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG048570, gene_TRIDC7BG038760 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G348200.1.cds1, TraesCS7B02G234500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb383440_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10297 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30648, Zma_g32887 |