Basic Information
Locus ID:
gene-QOZ80_6BG0492240
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 64972736 | 64974072 | + | gene-QOZ80_6BG0492240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 39,388.75 Da | 34.71 | 88.57 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 211 | 365 | 5.00337E-77 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 14 | 186 | 1.1239E-59 | - |
| Pfam | PF00190 | Cupin | 209 | 351 | 1.0E-20 | IPR006045 |
| Pfam | PF00190 | Cupin | 19 | 168 | 8.6E-24 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 17 | 357 | 1.35E-46 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 34 | 192 | 4.9E-29 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 208 | 371 | 7.2E-49 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 13 | 170 | 2.9E-31 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 208 | 352 | 2.6E-14 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 307 | 325 | 2.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 271 | 287 | 2.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 224 | 244 | 2.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 289 | 304 | 2.4E-14 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 329 | 346 | 2.4E-14 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_034569400.1 | 11S globulin seed storage protein 2-like [Setaria viridis] | 0 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6TGM6 | 11S seed storage protein OS=Setaria viridis OX=4556 GN=SEVIR_8G061100v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology