Basic Information
Locus ID:
gene-QOZ80_6BG0490240
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 63496993 | 63499381 | + | gene-QOZ80_6BG0490240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 72,869.34 Da | 43.79 | 86.48 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 608 | 653 | 2.31313E-23 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 599 | 658 | 2.66E-13 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 597 | 661 | 5.6E-15 | IPR013083 |
| SMART | SM00249 | PHD_3 | 608 | 654 | 1.0E-5 | IPR001965 |
| ProSitePatterns | PS01306 | Uncharacterized protein family UPF0054 signature. | 153 | 163 | - | IPR020549 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 609 | 653 | - | IPR019786 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 0 |
| RefSeq | XP_039792943.1 | PHD finger protein PERSISTENT TAPETAL CELL 1-like [Panicum virgatum] | 0 |
| Q67V61 | PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PTC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TGJ5 | PHD domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_43256 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology