halophFGD

Basic Information

Locus ID: gene-QOZ80_6BG0487690

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: Speckle-type POZ protein-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6B	61330804	61331259	-	gene-QOZ80_6BG0487690

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.44	16,515.83 Da	51.83	89.27	-0.13

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00651	BTB/POZ domain	20	108	1.7E-11	IPR000210
SUPERFAMILY	SSF54695	POZ domain	20	109	1.45E-12	IPR011333
Gene3D	G3DSA:3.30.710.10	Potassium Channel Kv1.1; Chain A	18	138	7.2E-26	IPR011333

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08991 (crossover junction endonuclease MUS81 [EC:3.1.22.-])

Pathway:

ko03440 (Homologous recombination) map03440 (Homologous recombination) ko03460 (Fanconi anemia pathway) map03460 (Fanconi anemia pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G21010.1	BTB-POZ and MATH domain 5.
RefSeq	XP_037451050.1	BTB/POZ and MATH domain-containing protein 1-like [Triticum dicoccoides]
Swiss-Prot	Q7T330	Speckle-type POZ protein OS=Danio rerio OX=7955 GN=spop PE=2 SV=1
TrEMBL	A0A3L6SFT3	BTB/POZ and MATH domain-containing protein 1-like OS=Panicum miliaceum OX=4540 GN=C2845_PM02G10880 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6BG0487690, gene-QOZ80_6BG0487700