Basic Information
Locus ID:
gene-QOZ80_6BG0485990
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 59720162 | 59723425 | + | gene-QOZ80_6BG0485990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.29 | 97,452.63 Da | 45.23 | 106.48 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 438 | 491 | 5.1E-7 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 46 | 267 | 7.7E-28 | IPR002182 |
| Pfam | PF00560 | Leucine Rich Repeat | 695 | 717 | 0.18 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 381 | 775 | 1.9E-61 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 36 | 309 | 2.14E-51 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 540 | 690 | 3.5E-31 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 293 | 392 | 4.0E-8 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 399 | 539 | 6.7E-26 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 691 | 821 | 4.0E-15 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 208 | 292 | 4.5E-7 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 29 | 200 | 1.7E-25 | IPR027417 |
| SMART | SM00369 | LRR_typ_2 | 599 | 622 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 551 | 575 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 504 | 525 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 458 | 481 | 4.9 | IPR003591 |
| PRINTS | PR00364 | Disease resistance protein signature | 65 | 80 | 2.8E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 148 | 162 | 2.8E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 244 | 258 | 2.8E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 669 | 685 | 2.8E-14 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46710.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_021307937.1 | putative disease resistance protein RGA1 isoform X2 [Sorghum bicolor] | 0 |
| Q7XA40 | Putative disease resistance protein RGA3 OS=Solanum bulbocastanum OX=147425 GN=RGA3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0A9LGG4 | Protein kinase domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH03.1775, CH03.1930 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0485990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0473950.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004556, gene-QYE76_017737 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g15850.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K051400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702607, Pt_Chr0702633 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G312800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030020, gene_TRIDC5BG031660 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G184900.1, TraesCS5B02G182900.3 ... |
| Poaceae | Zea mays | 1 | Zm00001eb310060_P001 |