Basic Information
Locus ID:
gene-QOZ80_6BG0479360
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
kDa ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 52534543 | 52536387 | + | gene-QOZ80_6BG0479360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 60,108.84 Da | 38.34 | 86.91 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12399 | RRM_HP0827_like | 442 | 517 | 8.23308E-30 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 443 | 513 | 7.3E-18 | IPR000504 |
| Pfam | PF03478 | Protein of unknown function (DUF295) | 319 | 355 | 1.1E-9 | IPR005174 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 430 | 523 | 2.69E-27 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 408 | 524 | 4.4E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 442 | 515 | 4.7E-23 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 441 | 519 | 18.632057 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24770.1 | 31-kDa RNA binding protein. Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 0 |
| RefSeq | XP_015611610.1 | uncharacterized protein LOC107276108 [Oryza sativa Japonica Group] | 0 |
| P19682 | 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TGP2 | RRM domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_43973 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology