Basic Information
Locus ID:
gene-QOZ80_6BG0468090
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 8763457 | 8767544 | + | gene-QOZ80_6BG0468090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.60 | 38,163.36 Da | 53.77 | 85.66 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 116 | 165 | 2.34371E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 321 | 356 | 4.5E-10 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 239 | 294 | 7.6E-20 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 122 | 160 | 7.5E-15 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 48 | 1.14E-8 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 235 | 300 | 7.06E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 303 | 362 | 1.58E-14 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 118 | 176 | 3.62E-13 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 313 | 359 | 1.9E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 115 | 165 | 2.6E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 228 | 294 | 6.5E-25 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 36 | 1.7E-7 | - |
| SMART | SM00727 | CBM | 235 | 280 | 2.9E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 321 | 358 | 5.4E-9 | IPR015940 |
| SMART | SM00165 | uba_6 | 122 | 162 | 4.5E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 2 | 364 | 1.5E-97 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 120 | 163 | 12.860156 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 35 | 10.092108 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 318 | 359 | 14.619245 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 332 | 346 | 2.9E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 347 | 362 | 2.9E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 265 | 287 | 2.9E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 315 | 331 | 2.9E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 90 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_025813528.1 | ubiquitin receptor RAD23d-like [Panicum hallii] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TJY4 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_45328 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology