Basic Information
Locus ID:
gene-QOZ80_6BG0467360
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 7387634 | 7388959 | + | gene-QOZ80_6BG0467360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 46,191.90 Da | 46.85 | 100.84 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 46 | 87 | 2.70944E-22 | - |
| Pfam | PF04564 | U-box domain | 42 | 114 | 4.6E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 36 | 118 | 1.77E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 220 | 419 | 1.06E-15 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 120 | 2.1E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 210 | 434 | 1.0E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 45 | 109 | 3.8E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 41 | 116 | 29.334106 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_034589630.1 | U-box domain-containing protein 21-like [Setaria viridis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6UYQ0 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_4G109100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology