Basic Information
Locus ID:
gene-QOZ80_6BG0465110
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 5338863 | 5339828 | - | gene-QOZ80_6BG0465110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 34,658.88 Da | 80.96 | 66.60 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 185 | 227 | 1.09841E-23 | - |
| Pfam | PF14369 | zinc-ribbon | 20 | 53 | 2.1E-13 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 185 | 227 | 2.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 233 | 1.2E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 233 | 3.7E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 226 | 1.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 227 | 12.312242 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 94 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 255 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025810728.1 | E3 ubiquitin-protein ligase RING1-like [Panicum hallii] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A2S3HKU5 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_4G284000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology