Basic Information
Locus ID:
gene-QOZ80_6BG0462010
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 2999575 | 3000867 | - | gene-QOZ80_6BG0462010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 22,208.99 Da | 37.53 | 92.64 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 133 | 174 | 2.29121E-26 | - |
| Pfam | PF04564 | U-box domain | 130 | 186 | 1.4E-13 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 3 | 93 | 8.6E-9 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 3 | 105 | 2.08E-16 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 187 | 2.65E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 125 | 1.1E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 189 | 1.3E-24 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 132 | 196 | 1.4E-19 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 133 | 10.266244 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 128 | 201 | 25.769291 | IPR003613 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_039842557.1 | U-box domain-containing protein 70-like isoform X4 [Panicum virgatum] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9QNN2 | U-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026965 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.3271, AH01.3272, BH01.3661, CH01.3844 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0462010 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0185430.1, HORVU.MOREX.r3.4HG0347270.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066275 |
| Poaceae | Oryza coarctata | 2 | Oco05G016260, Oco06G016910 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g31000.1, LOC_Os03g31044.2, LOC_Os03g31070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G320400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302778, Pt_Chr0704227 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr04G013600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G154600 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG056450, gene_TRIDC2BG059420 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G391300.1, TraesCS2B02G409700.1 ... |