Basic Information
Locus ID:
gene-QOZ80_6BG0461560
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6B | 2720176 | 2720745 | + | gene-QOZ80_6BG0461560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.71 | 19,635.38 Da | 32.55 | 89.63 | 0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 138 | 181 | 5.48256E-16 | - |
| Pfam | PF13639 | Ring finger domain | 138 | 181 | 1.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 186 | 4.64E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 187 | 2.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 180 | 3.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 181 | 12.489278 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813272.1 | RING-H2 finger protein ATL66-like [Panicum hallii] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2T7E2U2 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G333600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.296, BH06.405, CH06.402 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0509460, gene-QOZ80_6BG0461560 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013958 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G047100 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022660 |
| Poaceae | Zea mays | 1 | Zm00001eb376620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34749 |